PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 416aa    MW: 45846 Da    PI: 7.9269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-0688108425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+++   G C +GdrC++ H
  XP_004513959.1  88 SICKYWVN-GNCVHGDRCRYLH 108
                     58*****9.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0331339IPR000571Zinc finger, CCCH-type
SMARTSM003560.171438IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-584110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.16484111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-787109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-687106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.3E-44107404IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0073115154IPR001680WD40 repeat
SuperFamilySSF509781.36E-44116163IPR017986WD40-repeat-containing domain
PfamPF004000.0066119154IPR001680WD40 repeat
PROSITE profilePS5029423.203122373IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.179122163IPR001680WD40 repeat
PROSITE patternPS006780141155IPR019775WD40 repeat, conserved site
PRINTSPR003205.2E-7141155IPR020472G-protein beta WD-40 repeat
SMARTSM003204.2194231IPR001680WD40 repeat
SuperFamilySSF509781.36E-44201408IPR017986WD40-repeat-containing domain
SMARTSM003205.5E-7239277IPR001680WD40 repeat
PfamPF004006.8E-4242277IPR001680WD40 repeat
PROSITE profilePS5008212.079246286IPR001680WD40 repeat
PROSITE patternPS006780264278IPR019775WD40 repeat, conserved site
PRINTSPR003205.2E-7264278IPR020472G-protein beta WD-40 repeat
SMARTSM003202.0E-7280317IPR001680WD40 repeat
PfamPF004000.0012282316IPR001680WD40 repeat
PROSITE profilePS5008211.578287326IPR001680WD40 repeat
PRINTSPR003205.2E-7304318IPR020472G-protein beta WD-40 repeat
SMARTSM0032073320364IPR001680WD40 repeat
SMARTSM00320320367404IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMNMKVGRSR TERISGTTCA YWLAGRCNRN PCRFLHTETS YPSTASYHNA RKFHSFSKFE  60
KSRPKHNPNT ILNRNSEKTQ VADKSSPSIC KYWVNGNCVH GDRCRYLHRW SYGDGFATLT  120
KLQGHKKLVT GIVLPVGSDK LYSGSTDGTL RTWDCNSGQC TNLMNLGAEA TSLISEGPWI  180
FVGLTKAVMA WNIQTASHFT LDGPKGRILA MTVGNDTLFA GAEDGIISAW RGSSTADSPF  240
ELVASLCDHT KSVVCLAVGG DKMLCSGSKD QSIKVWDLDT LECKMTLNAH TDAVTSLIWW  300
DNYLLSGSSD CTIHVWAATE ERTLKVIYSH NVESDVVALS GMADPEAKPI LLCSCTDNSV  360
RLYELPSFAE RGRLFAKKEV GSFETGPGGL FFTGDRTGLL MVWKWLEEPR VEAASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1p22_A3e-14115413119420F-box/WD-repeat protein 1A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513959.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
RefseqXP_012575123.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-137C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLI1MB970.0I1MB97_SOYBN; Uncharacterized protein
STRINGGLYMA14G37100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF231645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-138zinc finger WD40 repeat protein 1